SNP Profiles of IMC 14   View Data

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 Key

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_Input profile
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
1._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
2._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
3._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
4._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
5._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
6._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
7._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
8._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
9._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
10._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
11._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
12._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
13._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
14._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
15._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
16._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
17._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
18._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
19._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
20._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
21._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
22._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
23._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
24._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
25._GC-04-054-3-18
CCAGCGTTTTTTCCCCAAGGCTAAAAGG
26._RUQ_1634
__CG____CC_GG_AA__
27._IMC_14
CCAGCGTTTTTTCC_AAGGCTAAAAGG
28._RUQ_1634
_AGCGTT______CTAA__
29._RUQ_1634
CTAG_CTTTCCCTCTAAAACTAGAAGG
30._GC-03-30-3-9
GGAGCGAAAAAA__AAGGAGAAAAGG
31._RUQ_1634
GGAGCGAAAAAA__AAGGAGAAAAGG
 1516171819202122232425262728
_Input profile
CCCCCCGGCCAAGGGGCTCCAAGGAATT
1._IMC_14
CCCCCCGGCCAAGGGGCTCCAAGGAATT
2._GC-03-030-3-09
CCCCCCGGCCAAGGGGCTCCAAGGAATT
3._GC-03-030-3-09
CCCCCCGGCCAAGGGGCTCCAAGGAATT
4._GC-03-030-3-09
CCCCCCGGCCAAGGGGCTCCAAGGAATT
5._GC-03-030-3-09
CCCCCCGGCCAAGGGGCTCCAAGGAATT
6._GC-03-030-3-09
CCCCCCGGCCAAGGGGCTCCAAGGAATT
7._GC-03-030-3-09
CCCCCCGGCCAAGGGGCTCCAAGGAATT
8._GC-03-030-3-09
CCCCCCGGCCAAGGGGCTCCAAGGAATT
9._GC-03-030-3-09
CCCCCCGGCCAAGGGGCTCCAAGGAATT
10._GC-03-030-3-09
CCCCCCGGCCAAGGGGCTCCAAGGAATT
11._IMC_14
CCCCCCGGCCAAGGGGCTCCAAGGAATT
12._IMC_14
CCCCCCGGCCAAGGGGCTCCAAGGAATT
13._IMC_14
CCCCCCGGCCAAGGGGCTCCAAGGAATT
14._IMC_14
CCCCCCGGCCAAGGGGCTCCAAGGAATT
15._IMC_14
CCCCCCGGCCAAGGGGCTCCAAGGAATT
16._IMC_14
CCCCCCGGCCAAGGGGCTCCAAGGAATT
17._IMC_14
CCCCCCGGCCAAGGGGCTCCAAGGAATT
18._IMC_14
CCCCCCGGCCAAGGGGCTCCAAGGAATT
19._IMC_14
CCCCCCGGCCAAGGGGCTCCAAGGAATT
20._IMC_14
CCCCCCGGCCAAGGGGCTCCAAGGAATT
21._IMC_14
CCCCCCGGCCAAGGGGCTCCAAGGAATT
22._GC-03-030-3-09
CCCCCCGGCCAAGGGGCTCCAAGGAATT
23._GC-03-030-3-09
CCCCCCGGCCAAGGGGCTCCAAGGAATT
24._GC-03-030-3-09
CCCCCCGGCCAAGGGGCTCCAAGGAATT
25._GC-04-054-3-18
CCCCCCGGCCAAGGGGCTCCAAGGAATT
26._RUQ_1634
__CCGG_AAGG__CC____
27._IMC_14
CCCCCCGGCCAAGGGGCTCCAAGGAATT
28._RUQ_1634
_CCCCGGCCAAGGGGCTCCAA_AATT
29._RUQ_1634
TTCCGGGGCTCCCCTTCTCCAGGGAACT
30._GC-03-30-3-9
GGGGGGCCGGAAGGCC_CC_GGAAAA
31._RUQ_1634
GGGGGGCCGGAAGGCC_CC_GGAAAA
 2930313233343536      
_Input profile
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
1._IMC_14
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
2._GC-03-030-3-09
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
3._GC-03-030-3-09
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
4._GC-03-030-3-09
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
5._GC-03-030-3-09
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
6._GC-03-030-3-09
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
7._GC-03-030-3-09
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
8._GC-03-030-3-09
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
9._GC-03-030-3-09
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
10._GC-03-030-3-09
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
11._IMC_14
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
12._IMC_14
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
13._IMC_14
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
14._IMC_14
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
15._IMC_14
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
16._IMC_14
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
17._IMC_14
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
18._IMC_14
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
19._IMC_14
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
20._IMC_14
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
21._IMC_14
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
22._GC-03-030-3-09
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
23._GC-03-030-3-09
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
24._GC-03-030-3-09
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
25._GC-04-054-3-18
AGCGAACTGTACTTGGX_XX_XX_XX_XX_XX_X
26._RUQ_1634
AG____AC__X_XX_XX_XX_XX_XX_X
27._IMC_14
AG_ACCTGTACTTGGX_XX_XX_XX_XX_XX_X
28._RUQ_1634
AGCGACCTGTAC__X_XX_XX_XX_XX_XX_X
29._RUQ_1634
AACCACCTGTCCTTGGX_XX_XX_XX_XX_XX_X
30._GC-03-30-3-9
AGCGACAGACACTTGGX_XX_XX_XX_XX_XX_X
31._RUQ_1634
AGCGACAGACACTTGGX_XX_XX_XX_XX_XX_X

Input profile: IMC_14

 
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Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

1._IMC_14

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

2._IMC_14 GC-03-030-3-09

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._IMC_14 GC-03-030-3-09

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._IMC_14 GC-03-030-3-09

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._IMC_14 GC-03-030-3-09

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._IMC_14 GC-03-030-3-09

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._IMC_14 GC-03-030-3-09

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._IMC_14 GC-03-030-3-09

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._IMC_14 GC-03-030-3-09

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._IMC_14 GC-03-030-3-09

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

11._IMC_14

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

12._IMC_14

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

13._IMC_14

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

14._IMC_14

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

15._IMC_14

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

16._IMC_14

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

17._IMC_14

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

18._IMC_14

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

19._IMC_14

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

20._IMC_14

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

21._IMC_14

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

22._IMC_14 GC-03-030-3-09

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

23._IMC_14 GC-03-030-3-09

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

24._IMC_14 GC-03-030-3-09

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

25._IMC_14 GC-04-054-3-18

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

26._IMC_14 RUQ_1634

identical
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

27._IMC_14

98.5 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

28._IMC_14 RUQ_1634

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._IMC_14 RUQ_1634

62.9 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

30._IMC_14 GC-03-30-3-9

54.7 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 9, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._IMC_14 RUQ_1634

54.7 %
32 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1165 8TcSNP1144 9TcSNP1075 10TcSNP1062
11TcSNP1060 12TcSNP998 13TcSNP953 14TcSNP929 15TcSNP917
16TcSNP891 17TcSNP872 18TcSNP723 19TcSNP619 20TcSNP591
21TcSNP577 22TcSNP560 23TcSNP534 24TcSNP529 25TcSNP469
26TcSNP429 27TcSNP372 28TcSNP242 29TcSNP230 30TcSNP226
31TcSNP193 32TcSNP151 33TcSNP150 34TcSNP144 35TcSNP32
36TcSNP25